8. NoteBooks

ipython notebook can be downloaded from this section. You can either see the results via nbviewer, or download and run them yourself. To do so, download the notebook and open a shell where is saved the file. Type:

ipython notebook

You should see the notebook name. Click on it and you are ready to try. Cels can be executed by typing CTRL+enter

8.1. UniProt

Here is a ipython notebook dedicated to UniProt, which can be downloaded notebooks/UniProt.ipynb or view its results on uniprot nbviewer

8.2. BioModels

Here is a ipython notebook dedicated to BioModels, which can be downloaded notebooks/BioModels.ipynb or view its results on biomodels nbviewer

8.3. ChEMBL

Here is a ipython notebook dedicated to ChEMBL, which can be downloaded notebooks/ChEMBL.ipynb or view its results on chembl nbviewer

8.4. Entrez/Eutils

Here is a ipython notebook dedicated to EUtils, which can be downloaded notebooks/Entrez_EUtils.ipynb or view its results on eutil nbviewer

8.5. KEGG

Here is a ipython notebook dedicated to KEGG, which can be downloaded notebooks/KEGG.ipynb or view its results on kegg nbviewer

8.6. MUSCLE

Here is a ipython notebook dedicated to MUSCLE, which can be downloaded notebooks/MUSCLE.ipynb or view its results on muscle nbviewer

8.7. NCBIBlast

Here is a ipython notebook dedicated to NCBIblast, which can be downloaded notebooks/NCBIBlast.ipynb or view its results on ncbiblast nbviewer

8.8. WikiPathway

Here is a ipython notebook dedicated to WikiPathway, which can be downloaded notebooks/WikiPathway.ipynb or view its results on wikipathway nbviewer

8.8.1. Gene Mapping

Here is a ipython notebook dedicated to Gene Mapping, which can be downloaded notebooks/Gene_Mapping.ipynb or view its results on gene mapping nbviewer

8.8.2. BioMart

Here is a ipython notebook dedicated to BioMart, which can be downloaded notebooks/BioMart or view its results on chembl biomiart

8.8.3. Ensembl

Here is a ipython notebook dedicated to Ensembl, which can be downloaded notebooks/Ensembl.ipynb or view its results on ensembl nbviewer