6. NoteBooks¶
ipython notebook can be downloaded from this section. You can either see the results via nbviewer, or download and run them yourself. To do so, download the notebook and open a shell where is saved the file. Type:
ipython notebook
You should see the notebook name. Click on it and you are ready to try. Cels can be executed by typing CTRL+enter
6.1. UniProt¶
Here is a ipython notebook dedicated to UniProt, which can be
downloaded notebooks/UniProt.ipynb
or view its results on
uniprot nbviewer
6.2. BioModels¶
Here is a ipython notebook dedicated to BioModels, which can be
downloaded notebooks/BioModels.ipynb
or view its results on
biomodels nbviewer
6.3. ChEMBL¶
Here is a ipython notebook dedicated to ChEMBL, which can be
downloaded notebooks/ChEMBL.ipynb
or view its results on
chembl nbviewer
6.4. Entrez/Eutils¶
Here is a ipython notebook dedicated to EUtils, which can be
downloaded notebooks/Entrez_EUtils.ipynb
or view its results on
eutil nbviewer
6.5. KEGG¶
Here is a ipython notebook dedicated to KEGG, which can be
downloaded notebooks/KEGG.ipynb
or view its results on
kegg nbviewer
6.6. MUSCLE¶
Here is a ipython notebook dedicated to MUSCLE, which can be
downloaded notebooks/MUSCLE.ipynb
or view its results on
muscle nbviewer
6.7. NCBIBlast¶
Here is a ipython notebook dedicated to NCBIblast, which can be
downloaded notebooks/NCBIBlast.ipynb
or view its results on
ncbiblast nbviewer
6.8. WikiPathway¶
Here is a ipython notebook dedicated to WikiPathway, which can be
downloaded notebooks/WikiPathway.ipynb
or view its results on
wikipathway nbviewer
6.8.1. Gene Mapping¶
Here is a ipython notebook dedicated to Gene Mapping, which can be
downloaded notebooks/Gene_Mapping.ipynb
or view its results on
gene mapping nbviewer
6.8.2. BioMart¶
Here is a ipython notebook dedicated to BioMart, which can be
downloaded notebooks/BioMart
or view its results on
chembl biomiart
6.8.3. Ensembl¶
Here is a ipython notebook dedicated to Ensembl, which can be
downloaded notebooks/Ensembl.ipynb
or view its results on
ensembl nbviewer