8. NoteBooks

ipython notebook can be downloaded from this section. You can either see the results via nbviewer, or download and run them yourself. To do so, download the notebook and open a shell where is saved the file. Type:

ipython notebook

You should see the notebook name. Click on it and you are ready to try. Cels can be executed by typing CTRL+enter

8.1. UniProt

Here is a ipython notebook dedicated to UniProt, which can be downloaded notebook/UniProt.ipynb or view its results on uniprot nbviewer

8.2. BioModels

Here is a ipython notebook dedicated to BioModels, which can be downloaded notebook/BioModels.ipynb or view its results on biomodels nbviewer

8.3. ChEMBL

Here is a ipython notebook dedicated to ChEMBL, which can be downloaded notebook/ChEMBL.ipynb or view its results on chembl nbviewer

8.4. Entrez/Eutils

Here is a ipython notebook dedicated to EUtils, which can be downloaded notebook/Entrez_EUtils.ipynb or view its results on eutils nbviewer

8.5. KEGG

Here is a ipython notebook dedicated to KEGG, which can be downloaded notebook/KEGG.ipynb or view its results on KEGG nbviewer

8.6. MUSCLE

Here is a ipython notebook dedicated to MUSCLE, which can be downloaded notebook/MUSCLE.ipynb or view its results on muscle nbviewer

8.7. NCBIBlast

Here is a ipython notebook dedicated to NCBIblast, which can be downloaded notebook/NCBIBlast.ipynb or view its results on ncbiblast nbviewer

8.8. WikiPathway

Here is a ipython notebook dedicated to WikiPathway, which can be downloaded notebook/WikiPathway.ipynb or view its results on wikipathway nbviewer

8.8.1. Gene Mapping

This is a more general notebook related to mapping of identifiers, which combines several services.

Please download notebook/Gene_Mapping.ipynb.